Research workbench
AlphaFold monomer V2.0 prediction for petrobactin-binding protein yclq (P94421)
Analyse AlphaFold monomer V2.0 prediction for petrobactin-binding protein yclq (P94421) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P94421
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xD0Eb3f1c6E7C00D7f0b12CBe40cD816bCe92F0D5
- Molecule
- Petrobactin-binding protein yclq
- UniProt
- P94421
- Pockets
- 3 · best druggability 0.63
Structure
1 distinct chain · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Petrobactin-binding protein yclq | protein | 317 | 40% helix, 19% strand | P94421 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.63 | 0.83 | 34 | empty |
| 2 | 67 | 0.44 | 0.81 | 15 | empty |
| 3 | 77 | 0.34 | 0.76 | 16 | empty |
Compared structures
- 3GFV · Crystal Structure of Petrobactin-binding Protein YclQ from Bacillu subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 3GFV · Crystal structure of petrobactin-binding protein yclq from bacillu subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P94421
- Elsewhere: UniProt P94421 · AlphaFold DB P94421
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