Research workbench
AlphaFold monomer V2.0 prediction for putative ABC transporter periplasmic-binding protein ycjn (P76042)
Analyse AlphaFold monomer V2.0 prediction for putative ABC transporter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P76042
- Type
- protein
- Length
- 430 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Putative ABC transporter periplasmic-binding protein ycjn
- UniProt
- P76042
- Pockets
- 2 · best druggability 0.62
Structure
1 distinct chain · 48% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ABC transporter periplasmic-binding protein ycjn | protein | 430 | 48% helix, 17% strand | P76042 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 310 | 0.62 | 0.79 | 33 | empty |
| 2 | 111 | 0.60 | 0.86 | 19 | empty |
Compared structures
- 8VQK · YcjN from Escherichia coli · an experimental structure of the same protein · chain A against B, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76042
- Elsewhere: UniProt P76042 · AlphaFold DB P76042
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