Research workbench
AlphaFold monomer V2.0 prediction for protein YCF2 (P56786)
Analyse AlphaFold monomer V2.0 prediction for protein YCF2 (P56786) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P56786
- Type
- protein
- Length
- 2,294 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0FAc74Bf23fFf003DE1B308Db5D5D92f90E0bFbd
- Molecule
- Protein YCF2
- UniProt
- P56786
- Pockets
- 19 · best druggability 0.83
Structure
1 distinct chain · 25% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein YCF2 | protein | 2294 | 25% helix, 1% strand | P56786 |
Pockets
19 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 891 | 0.83 | 0.84 | 82 | empty |
| 2 | 1041 | 0.79 | 0.81 | 99 | empty |
| 3 | 1079 | 0.76 | 0.78 | 75 | empty |
| 4 | 316 | 0.56 | 0.75 | 32 | empty |
| 5 | 70 | 0.52 | 0.85 | 15 | empty |
Compared structures
- 8XKV · Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in Apo state · an experimental structure of the same protein · chain A against D, TM-score 0.18
- 8XKU · Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in ATP-bound state · an experimental structure of the same protein · chain A against D, TM-score 0.18
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56786
- Elsewhere: UniProt P56786 · AlphaFold DB P56786
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