Research workbench
AlphaFold monomer V2.0 prediction for YCF48-like protein (Q8DI95)
Analyse AlphaFold monomer V2.0 prediction for YCF48-like protein (Q8DI95) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8DI95
- Type
- protein
- Length
- 347 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDACF305FCe4816f43243c916E3ef2B4521833de4
- Molecule
- YCF48-like protein
- UniProt
- Q8DI95
- Pockets
- 3 · best druggability 0.73
Structure
1 distinct chain · 1% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | YCF48-like protein | protein | 347 | 1% helix, 41% strand | Q8DI95 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 708 | 0.73 | 0.79 | 47 | empty |
| 2 | 61 | 0.33 | 0.77 | 16 | empty |
| 3 | 58 | 0.33 | 0.77 | 15 | empty |
Compared structures
- 5OJ5 · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 5OJ5 · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 5OJP · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 5OJP · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 2XBG · Crystal structure of YCF48 from thermosynechococcus elongatus · an experimental structure of the same protein · chain A against A, TM-score 0.86
- 2XBG · Crystal Structure of YCF48 from Thermosynechococcus elongatus · an experimental structure of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DI95
- Elsewhere: UniProt Q8DI95 · AlphaFold DB Q8DI95
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