Research workbench
AlphaFold monomer V2.0 prediction for probable L,D-transpeptidase ybis (P0AAX9)
Analyse AlphaFold monomer V2.0 prediction for probable L,D-transpeptidase ybis (P0AAX9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AAX9
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xe53B460B01322174fc73C45BCd0b0a003515f3e4
- Molecule
- Probable L,D-transpeptidase ybis
- UniProt
- P0AAX9
- Pockets
- 2 · best druggability 0.55
Structure
1 distinct chain · 18% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable L,D-transpeptidase ybis | protein | 306 | 18% helix, 25% strand | P0AAX9 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.55 | 0.78 | 29 | empty |
| 2 | 245 | 0.55 | 0.77 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AAX9
- Elsewhere: UniProt P0AAX9 · AlphaFold DB P0AAX9
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