Research workbench
AlphaFold monomer V2.0 prediction for probable aspartic-type endopeptidase TRV_05382 (D4DE18)
Analyse AlphaFold monomer V2.0 prediction for probable aspartic-type endopeptidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- D4DE18
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- Probable aspartic-type endopeptidase TRV_05382
- UniProt
- D4DE18
- Pockets
- 4 · best druggability 0.82
Structure
1 distinct chain · 14% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable aspartic-type endopeptidase TRV_05382 | protein | 401 | 14% helix, 41% strand | D4DE18 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 700 | 0.82 | 0.86 | 68 | empty |
| 2 | 69 | 0.40 | 0.79 | 16 | empty |
| 3 | 53 | 0.35 | 0.78 | 17 | empty |
| 4 | 51 | 0.33 | 0.78 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D4DE18
- Elsewhere: UniProt D4DE18 · AlphaFold DB D4DE18
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