Research workbench
AlphaFold monomer V2.0 prediction for probable peptide ABC transporter periplasmic-binding protein Y4TO (P55669)
Analyse AlphaFold monomer V2.0 prediction for probable peptide ABC transporter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55669
- Type
- protein
- Length
- 531 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9e7B5D87BCfF3f2778427eC04CAcD586303e4B9c
- Molecule
- Probable peptide ABC transporter periplasmic-binding protein Y4TO
- UniProt
- P55669
- Pockets
- 4 · best druggability 0.81
Structure
1 distinct chain · 31% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable peptide ABC transporter periplasmic-binding protein Y4TO | protein | 531 | 31% helix, 21% strand | P55669 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.81 | 0.85 | 89 | empty |
| 2 | 193 | 0.52 | 0.78 | 25 | empty |
| 3 | 87 | 0.52 | 0.84 | 19 | empty |
| 4 | 61 | 0.34 | 0.77 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55669
- Elsewhere: UniProt P55669 · AlphaFold DB P55669
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