Research workbench
AlphaFold monomer V2.0 prediction for uncharacterized protein Y4JD (P55504)
Analyse AlphaFold monomer V2.0 prediction for uncharacterized protein Y4JD (P55504) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55504
- Type
- protein
- Length
- 511 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- Uncharacterized protein Y4JD
- UniProt
- P55504
- Pockets
- 8 · best druggability 0.56
Structure
1 distinct chain · 50% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein Y4JD | protein | 511 | 50% helix, 9% strand | P55504 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.56 | 0.79 | 26 | empty |
| 2 | 128 | 0.54 | 0.82 | 26 | empty |
| 3 | 223 | 0.52 | 0.76 | 33 | empty |
| 4 | 179 | 0.49 | 0.77 | 25 | empty |
| 5 | 94 | 0.40 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55504
- Elsewhere: UniProt P55504 · AlphaFold DB P55504
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