Research workbench
AlphaFold monomer V2.0 prediction for putative transmembrane protein AT3G54730 (P0DKG2)
Analyse AlphaFold monomer V2.0 prediction for putative transmembrane protein AT3G54730… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0DKG2
- Type
- protein
- Length
- 387 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Putative transmembrane protein AT3G54730
- UniProt
- P0DKG2
- Pockets
- 5 · best druggability 0.83
Structure
1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative transmembrane protein AT3G54730 | protein | 387 | 42% helix, 16% strand | P0DKG2 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 979 | 0.83 | 0.83 | 93 | empty |
| 2 | 943 | 0.77 | 0.80 | 87 | empty |
| 3 | 238 | 0.75 | 0.88 | 20 | empty |
| 4 | 145 | 0.66 | 0.87 | 21 | empty |
| 5 | 221 | 0.63 | 0.82 | 28 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DKG2
- Elsewhere: UniProt P0DKG2 · AlphaFold DB P0DKG2
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