Research workbench
AlphaFold monomer V2.0 prediction for uncharacterized 50 kda protein in type I retrotransposable element R1DM (P16424)
Analyse AlphaFold monomer V2.0 prediction for uncharacterized 50 kda protein in type I… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P16424
- Type
- protein
- Length
- 471 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC2967d7B3E3463271F07d8ffAC3593394B1AD8eA
- Molecule
- Uncharacterized 50 kda protein in type I retrotransposable element R1DM
- UniProt
- P16424
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 39% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized 50 kda protein in type I retrotransposable element R1DM | protein | 471 | 39% helix, 12% strand | P16424 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 675 | 0.71 | 0.78 | 48 | empty |
| 2 | 274 | 0.60 | 0.79 | 22 | empty |
| 3 | 337 | 0.58 | 0.76 | 35 | empty |
| 4 | 298 | 0.51 | 0.73 | 28 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16424
- Elsewhere: UniProt P16424 · AlphaFold DB P16424
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