Research workbench
AlphaFold monomer V2.0 prediction for carbamoyl-phosphate synthase large chain (P00968)
Analyse AlphaFold monomer V2.0 prediction for carbamoyl-phosphate synthase large chain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P00968
- Type
- protein
- Length
- 1,073 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB1F9f6f3e842952AC4115b59A6e6F9EF45a0C86d
- Molecule
- Carbamoyl-phosphate synthase large chain
- UniProt
- P00968
- Pockets
- 10 · best druggability 0.83
Structure
1 distinct chain · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbamoyl-phosphate synthase large chain | protein | 1073 | 38% helix, 20% strand | P00968 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1133 | 0.83 | 0.84 | 90 | empty |
| 2 | 779 | 0.81 | 0.85 | 90 | empty |
| 3 | 175 | 0.81 | 0.96 | 40 | empty |
| 4 | 511 | 0.73 | 0.82 | 51 | empty |
| 5 | 254 | 0.60 | 0.80 | 34 | empty |
Compared structures
- 1BXR · Structure of carbamoyl phosphate synthetase complexed with the ATP analog amppnp · an experimental structure of the same protein · chain A against G, TM-score 0.99
- 1BXR · Structure of carbamoyl phosphate synthetase complexed with the ATP analog amppnp · an experimental structure of the same protein · chain A against G, TM-score 0.99
- 1JDB · Carbamoyl phosphate synthetase from escherichia COLI · an experimental structure of the same protein · chain A against K, TM-score 0.99
- 1JDB · Carbamoyl phosphate synthetase from escherichia COLI · an experimental structure of the same protein · chain A against K, TM-score 0.99
- 1M6V · Crystal Structure of the G359F (small subunit) Point Mutant of Carbamoyl Phosphate… · an experimental structure of the same protein · chain A against G, TM-score 0.99
- 1M6V · Crystal structure of the G359F (small subunit) point mutant of carbamoyl phosphate… · an experimental structure of the same protein · chain A against G, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00968
- Elsewhere: UniProt P00968 · AlphaFold DB P00968
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