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AlphaFold monomer V2.0 prediction for uncharacterized signaling protein PA1727 (Q9I310)

Analyse AlphaFold monomer V2.0 prediction for uncharacterized signaling protein PA1727… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9I310
Type: protein
Length: 685 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xd6dAC69607350B6653b5aBcE7c26e6D0Da978570
Molecule: Uncharacterized signaling protein PA1727
UniProt: Q9I310
Pockets: 5 · best druggability 0.75

Structure

1 distinct chain · 60% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized signaling protein PA1727	protein	685	60% helix, 17% strand	Q9I310

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.75	0.97	27	empty
2	362	0.61	0.77	40	empty
3	119	0.50	0.81	14	empty
4	98	0.36	0.75	20	empty
5	77	0.31	0.73	16	empty

Compared structures

5M1T · Pamucr phosphodiesterase, C-di-gmp complex · an experimental structure of the same protein · chain A against A, TM-score 0.36
5M1T · PaMucR Phosphodiesterase, c-di-GMP complex · an experimental structure of the same protein · chain A against A, TM-score 0.36

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I310
Elsewhere: UniProt Q9I310 · AlphaFold DB Q9I310

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