Research workbench
AlphaFold monomer V2.0 prediction for degv domain-containing protein SPR1415 (Q8DP17)
Analyse AlphaFold monomer V2.0 prediction for degv domain-containing protein SPR1415… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8DP17
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEBBf35c923DFc0Ff59C3A72CE4B322ae91D42e05
- Molecule
- Degv domain-containing protein SPR1415
- UniProt
- Q8DP17
- Pockets
- 2 · best druggability 0.72
Structure
1 distinct chain · 41% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Degv domain-containing protein SPR1415 | protein | 282 | 41% helix, 22% strand | Q8DP17 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.72 | 0.95 | 28 | empty |
| 2 | 109 | 0.42 | 0.77 | 17 | empty |
Compared structures
- 6DKE · The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B1… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6DKE · The X-ray crystal structure of streptococcus pneumoniae fatty acid kinase (fak) B1… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6NOK · The X-ray crystal structure of streptococcus pneumoniae fatty acid kinase (fak) B1… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 6NOK · The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B1… · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DP17
- Elsewhere: UniProt Q8DP17 · AlphaFold DB Q8DP17
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