Research workbench
AlphaFold monomer V2.0 prediction for nucleotide-binding protein SPD_1396 (Q04JI2)
Analyse AlphaFold monomer V2.0 prediction for nucleotide-binding protein SPD_1396… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q04JI2
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB5421b6788433D11c92ee25039BE5189Ef459De4
- Molecule
- Nucleotide-binding protein SPD_1396
- UniProt
- Q04JI2
- Pockets
- 3 · best druggability 0.49
Structure
1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleotide-binding protein SPD_1396 | protein | 296 | 44% helix, 19% strand | Q04JI2 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 198 | 0.49 | 0.76 | 26 | empty |
| 2 | 99 | 0.40 | 0.77 | 16 | empty |
| 3 | 74 | 0.33 | 0.75 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04JI2
- Elsewhere: UniProt Q04JI2 · AlphaFold DB Q04JI2
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