Research workbench
AlphaFold monomer V2.0 prediction for putative peptide transport permease protein RV1283C (P9WFZ7)
Analyse AlphaFold monomer V2.0 prediction for putative peptide transport permease… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P9WFZ7
- Type
- protein
- Length
- 325 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Putative peptide transport permease protein RV1283C
- UniProt
- P9WFZ7
- Pockets
- 6 · best druggability 0.55
Structure
1 distinct chain · 78% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative peptide transport permease protein RV1283C | protein | 325 | 78% helix, 1% strand | P9WFZ7 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.55 | 0.81 | 26 | empty |
| 2 | 106 | 0.44 | 0.78 | 23 | empty |
| 3 | 90 | 0.39 | 0.76 | 24 | empty |
| 4 | 75 | 0.33 | 0.75 | 11 | empty |
| 5 | 60 | 0.33 | 0.76 | 13 | empty |
Compared structures
- 8J5Q · Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the pre-translocation state · an experimental structure of the same protein · chain A against B, TM-score 0.95
- 8J5S · Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the pre-catalytic intermediate… · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 8J5R · Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the resting state · an experimental structure of the same protein · chain A against B, TM-score 0.94
- 8J5T · Cryo-EM structure of Mycobacterium tuberculosis OppABCD in the catalytic intermediate… · an experimental structure of the same protein · chain A against B, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WFZ7
- Elsewhere: UniProt P9WFZ7 · AlphaFold DB P9WFZ7
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