Research workbench
AlphaFold monomer V2.0 prediction for probable xylitol oxidase (Q9ZBU1)
Analyse AlphaFold monomer V2.0 prediction for probable xylitol oxidase (Q9ZBU1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9ZBU1
- Type
- protein
- Length
- 418 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
- Molecule
- Probable xylitol oxidase
- UniProt
- Q9ZBU1
- Pockets
- 5 · best druggability 0.82
Structure
1 distinct chain · 27% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable xylitol oxidase | protein | 418 | 27% helix, 26% strand | Q9ZBU1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.82 | 0.93 | 62 | empty |
| 2 | 57 | 0.39 | 0.81 | 17 | empty |
| 3 | 100 | 0.39 | 0.76 | 20 | empty |
| 4 | 74 | 0.39 | 0.78 | 17 | empty |
| 5 | 52 | 0.37 | 0.80 | 13 | empty |
Compared structures
- 2VFV · Alditol oxidase from streptomyces coelicolor A3(2): complex with sulphite · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2VFV · Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Sulphite · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2VFR · Alditol oxidase from streptomyces coelicolor A3(2): native enzyme · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2VFR · Alditol Oxidase from Streptomyces coelicolor A3(2): Native Enzyme · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2VFT · Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Sorbitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2VFT · Alditol oxidase from streptomyces coelicolor A3(2): complex with sorbitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2VFU · Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Mannitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2VFU · Alditol oxidase from streptomyces coelicolor A3(2): complex with mannitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2VFS · Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Xylitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2VFS · Alditol oxidase from streptomyces coelicolor A3(2): complex with xylitol · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZBU1
- Elsewhere: UniProt Q9ZBU1 · AlphaFold DB Q9ZBU1
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