Research workbench
AlphaFold monomer V2.0 prediction for exo-1,4-beta-xylosidase xlnd (O00089)
Analyse AlphaFold monomer V2.0 prediction for exo-1,4-beta-xylosidase xlnd (O00089) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O00089
- Type
- protein
- Length
- 804 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa7895d4C013f5DC92500149D1BFf12D23755C20
- Molecule
- Exo-1,4-beta-xylosidase xlnd
- UniProt
- O00089
- Pockets
- 4 · best druggability 0.77
Structure
1 distinct chain · 30% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exo-1,4-beta-xylosidase xlnd | protein | 804 | 30% helix, 19% strand | O00089 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 424 | 0.77 | 0.86 | 42 | empty |
| 2 | 102 | 0.40 | 0.77 | 21 | empty |
| 3 | 89 | 0.33 | 0.74 | 17 | empty |
| 4 | 62 | 0.32 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00089
- Elsewhere: UniProt O00089 · AlphaFold DB O00089
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