Research workbench
AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase C (O69230)
Analyse AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase C (O69230) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O69230
- Type
- protein
- Length
- 1,086 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x923014Dfc95D087762F5F4fb0e38d445B684DB83
- Molecule
- Endo-1,4-beta-xylanase C
- UniProt
- O69230
- Pockets
- 7 · best druggability 0.77
Structure
1 distinct chain · 16% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase C | protein | 1086 | 16% helix, 35% strand | O69230 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 816 | 0.77 | 0.81 | 76 | empty |
| 2 | 820 | 0.74 | 0.78 | 60 | empty |
| 3 | 482 | 0.65 | 0.77 | 49 | empty |
| 4 | 229 | 0.51 | 0.75 | 24 | empty |
| 5 | 240 | 0.48 | 0.74 | 29 | empty |
Compared structures
- 4W8L · Structure of GH10 from paenibacillus barcinonensis · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 4W8L · Structure of GH10 from Paenibacillus barci nsis · an experimental structure of the same protein · chain A against A, TM-score 0.32
- 4XUP · Structure of the N-terminal CBM22-1-CBM22-2 tandem domain from paenibacillus… · an experimental structure of the same protein · chain A against D, TM-score 0.24
- 4XUP · Structure of the N-terminal CBM22-1-CBM22-2 tandem domain from Paenibacillus barci nsis… · an experimental structure of the same protein · chain A against D, TM-score 0.24
- 4XUN · Structure of the CBM22-2 xylan-binding domain from Paenibacillus barci nsis Xyn10C · an experimental structure of the same protein · chain A against A, TM-score 0.15
- 4XUN · Structure of the CBM22-2 xylan-binding domain from paenibacillus barcinonensis XYN10C · an experimental structure of the same protein · chain A against A, TM-score 0.15
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O69230
- Elsewhere: UniProt O69230 · AlphaFold DB O69230
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