Research workbench
AlphaFold monomer V2.0 prediction for beta-xylosidase (P07129)
Analyse AlphaFold monomer V2.0 prediction for beta-xylosidase (P07129) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P07129
- Type
- protein
- Length
- 535 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7c75F0f7d6d136A2b8D4C6C6e9b3D8a697949DF1
- Molecule
- Beta-xylosidase
- UniProt
- P07129
- Pockets
- 5 · best druggability 0.65
Structure
1 distinct chain · 1% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-xylosidase | protein | 535 | 1% helix, 47% strand | P07129 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.65 | 0.81 | 25 | empty |
| 2 | 135 | 0.56 | 0.82 | 25 | empty |
| 3 | 235 | 0.55 | 0.78 | 23 | empty |
| 4 | 71 | 0.38 | 0.78 | 16 | empty |
| 5 | 84 | 0.35 | 0.75 | 20 | empty |
Compared structures
- 5ZQX · Crystal structure of beta-xylosidase mutant (E186Q) from Bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 5ZQX · Crystal structure of beta-xylosidase mutant (E186Q) from bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 5ZQJ · Crystal structure of beta-xylosidase from Bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 5ZQJ · Crystal structure of beta-xylosidase from bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 5ZQS · Crystal structure of beta-xylosidase mutant (E186Q/F503Y) from bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 5ZQS · Crystal structure of beta-xylosidase mutant (E186Q/F503Y) from Bacillus pumilus · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07129
- Elsewhere: UniProt P07129 · AlphaFold DB P07129
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