Research workbench
AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (C6CRV0)
Analyse AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase a (C6CRV0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- C6CRV0
- Type
- protein
- Length
- 1,462 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x60C72ad9D455B17009020cE827574DBF55868757
- Molecule
- Endo-1,4-beta-xylanase a
- UniProt
- C6CRV0
- Pockets
- 14 · best druggability 0.66
Structure
1 distinct chain · 21% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase a | protein | 1462 | 21% helix, 34% strand | C6CRV0 |
Pockets
14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 574 | 0.66 | 0.77 | 70 | empty |
| 2 | 356 | 0.65 | 0.80 | 46 | empty |
| 3 | 724 | 0.65 | 0.74 | 57 | empty |
| 4 | 210 | 0.53 | 0.77 | 30 | empty |
| 5 | 213 | 0.51 | 0.76 | 30 | empty |
Compared structures
- 3RDK · Protein crystal structure of xylanase A1 of paenibacillus sp. jdr-2 · an experimental structure of the same protein · chain A against B, TM-score 0.23
- 3RDK · Protein crystal structure of xylanase A1 of Paenibacillus sp. JDR-2 · an experimental structure of the same protein · chain A against B, TM-score 0.23
- 3RO8 · Crystal structure of the catalytic domain of XYNA1 from paenibacillus sp. jdr-2 · an experimental structure of the same protein · chain A against C, TM-score 0.20
- 3RO8 · Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 · an experimental structure of the same protein · chain A against C, TM-score 0.20
- 4E4P · Second native structure of xylanase A1 from paenibacillus sp. jdr-2 · an experimental structure of the same protein · chain A against A, TM-score 0.20
- 4E4P · Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2 · an experimental structure of the same protein · chain A against A, TM-score 0.20
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6CRV0
- Elsewhere: UniProt C6CRV0 · AlphaFold DB C6CRV0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.