Research workbench
AlphaFold monomer V2.0 prediction for xylosyltransferase sqv-6 (Q5QQ52)
Analyse AlphaFold monomer V2.0 prediction for xylosyltransferase sqv-6 (Q5QQ52) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5QQ52
- Type
- protein
- Length
- 803 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf0499937360e4cB9525C05fF483fd933882978d7
- Molecule
- Xylosyltransferase sqv-6
- UniProt
- Q5QQ52
- Pockets
- 8 · best druggability 0.76
Structure
1 distinct chain · 29% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylosyltransferase sqv-6 | protein | 803 | 29% helix, 25% strand | Q5QQ52 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1175 | 0.76 | 0.78 | 108 | empty |
| 2 | 454 | 0.70 | 0.81 | 34 | empty |
| 3 | 106 | 0.54 | 0.83 | 29 | empty |
| 4 | 168 | 0.48 | 0.77 | 22 | empty |
| 5 | 81 | 0.41 | 0.78 | 17 | empty |
Modifications
Observed in the structure: 11 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5QQ52
- Elsewhere: UniProt Q5QQ52 · AlphaFold DB Q5QQ52
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