Research workbench
AlphaFold monomer V2.0 prediction for xylose isomerase (Q40082)
Analyse AlphaFold monomer V2.0 prediction for xylose isomerase (Q40082) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q40082
- Type
- protein
- Length
- 479 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDB1B87D3D3e7F975C31C76E78e19615Bb4ABF1ec
- Molecule
- Xylose isomerase
- UniProt
- Q40082
- Pockets
- 6 · best druggability 0.64
Structure
1 distinct chain · 44% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase | protein | 479 | 44% helix, 11% strand | Q40082 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.64 | 0.88 | 31 | empty |
| 2 | 560 | 0.63 | 0.75 | 51 | empty |
| 3 | 165 | 0.45 | 0.75 | 22 | empty |
| 4 | 132 | 0.44 | 0.76 | 25 | empty |
| 5 | 50 | 0.35 | 0.80 | 15 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q40082
- Elsewhere: UniProt Q40082 · AlphaFold DB Q40082
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