Research workbench
AlphaFold monomer V2.0 prediction for xylose isomerase (B0CKM9)
Analyse AlphaFold monomer V2.0 prediction for xylose isomerase (B0CKM9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0CKM9
- Type
- protein
- Length
- 435 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Xylose isomerase
- UniProt
- B0CKM9
- Pockets
- 5 · best druggability 0.73
Structure
1 distinct chain · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase | protein | 435 | 48% helix, 13% strand | B0CKM9 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.73 | 0.99 | 21 | empty |
| 2 | 500 | 0.65 | 0.77 | 64 | empty |
| 3 | 115 | 0.39 | 0.74 | 20 | empty |
| 4 | 50 | 0.27 | 0.74 | 12 | empty |
| 5 | 56 | 0.25 | 0.73 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0CKM9
- Elsewhere: UniProt B0CKM9 · AlphaFold DB B0CKM9
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