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AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein WHY1, chloroplastic (Q9LL85)

Analyse AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein WHY1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9LL85
Type: protein
Length: 274 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x010B024D599893c4b5edc91b70cCb2Dc2F8A321a
Molecule: Single-stranded DNA-binding protein WHY1, chloroplastic
UniProt: Q9LL85
Pockets: 4 · best druggability 0.35

Structure

1 distinct chain · 14% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-stranded DNA-binding protein WHY1, chloroplastic	protein	274	14% helix, 27% strand	Q9LL85

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.35	0.78	13	empty
2	68	0.30	0.74	13	empty
3	68	0.29	0.73	14	empty
4	59	0.29	0.74	16	empty

Compared structures

1L3A · Structure of the plant transcriptional regulator PBF-2 · an experimental structure of the same protein · chain A against C, TM-score 0.62
1L3A · Structure of the plant transcriptional regulator pbf-2 · an experimental structure of the same protein · chain A against C, TM-score 0.62

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LL85
Elsewhere: UniProt Q9LL85 · AlphaFold DB Q9LL85

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