Research workbench
AlphaFold monomer V2.0 prediction for whirlin (Q80VW5)
Analyse AlphaFold monomer V2.0 prediction for whirlin (Q80VW5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q80VW5
- Type
- protein
- Length
- 918 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3F7c838ccc23133e72aA1c8841D2c157C4B4810a
- Molecule
- Whirlin
- UniProt
- Q80VW5
- Pockets
- 9 · best druggability 0.65
Structure
1 distinct chain · 22% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Whirlin | protein | 918 | 22% helix, 15% strand | Q80VW5 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 377 | 0.65 | 0.78 | 28 | empty |
| 2 | 372 | 0.63 | 0.78 | 42 | empty |
| 3 | 200 | 0.48 | 0.75 | 25 | empty |
| 4 | 53 | 0.44 | 0.84 | 13 | empty |
| 5 | 78 | 0.41 | 0.79 | 19 | empty |
Compared structures
- 6Y9O · Crystal structure of whirlin PDZ3_C-ter in complex with cask internal PDZ binding motif… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9O · Crystal structure of Whirlin PDZ3_C-ter in complex with CASK internal PDZ binding motif… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9N · Crystal structure of whirlin PDZ3_C-ter in complex with myosin 15A C- terminal PDZ… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9N · Crystal structure of Whirlin PDZ3_C-ter in complex with Myosin 15a C-terminal PDZ binding… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9P · Crystal structure of Whirlin PDZ3_C-ter in complex with Harmonin a1 C-terminal PDZ… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9P · Crystal structure of whirlin PDZ3_C-ter in complex with harmonin A1 C- terminal PDZ… · an experimental structure of the same protein · chain A against A, TM-score 0.10
- 6Y9Q · Crystal structure of Whirlin PDZ3_C-ter in complex with Taperin internal PDZ binding… · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 6Y9Q · Crystal structure of whirlin PDZ3_C-ter in complex with taperin internal PDZ binding… · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 6Y38 · Crystal structure of whirlin PDZ3 in complex with myosin 15A C- terminal PDZ binding… · an experimental structure of the same protein · chain A against B, TM-score 0.10
- 6Y38 · Crystal structure of Whirlin PDZ3 in complex with Myosin 15a C-terminal PDZ binding motif… · an experimental structure of the same protein · chain A against B, TM-score 0.10
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80VW5
- Elsewhere: UniProt Q80VW5 · AlphaFold DB Q80VW5
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