Research workbench
AlphaFold monomer V2.0 prediction for variant surface glycoprotein antat 1.1C (P06016)
Analyse AlphaFold monomer V2.0 prediction for variant surface glycoprotein antat 1.1C… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P06016
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- Variant surface glycoprotein antat 1.1C
- UniProt
- P06016
- Pockets
- 2 · best druggability 0.59
Structure
1 distinct chain · 51% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Variant surface glycoprotein antat 1.1C | protein | 482 | 51% helix, 9% strand | P06016 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.59 | 0.77 | 38 | empty |
| 2 | 173 | 0.45 | 0.75 | 22 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06016
- Elsewhere: UniProt P06016 · AlphaFold DB P06016
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