Research workbench
AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 41 (P38959)
Analyse AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P38959
- Type
- protein
- Length
- 992 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- Vacuolar protein sorting-associated protein 41
- UniProt
- P38959
- Pockets
- 4 · best druggability 0.74
Structure
1 distinct chain · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar protein sorting-associated protein 41 | protein | 992 | 37% helix, 18% strand | P38959 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.74 | 0.80 | 61 | empty |
| 2 | 170 | 0.43 | 0.74 | 24 | empty |
| 3 | 76 | 0.34 | 0.75 | 12 | empty |
| 4 | 53 | 0.31 | 0.76 | 12 | empty |
Compared structures
- 7ZU0 · HOPS tethering complex from yeast · an experimental structure of the same protein · chain A against F, TM-score 0.11
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38959
- Elsewhere: UniProt P38959 · AlphaFold DB P38959
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