Research workbench
AlphaFold monomer V2.0 prediction for vacuole membrane protein 1 (Q6NYY9)
Analyse AlphaFold monomer V2.0 prediction for vacuole membrane protein 1 (Q6NYY9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6NYY9
- Type
- protein
- Length
- 406 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x281a6B0837cBc4ed623904D317162712731B3e50
- Molecule
- Vacuole membrane protein 1
- UniProt
- Q6NYY9
- Pockets
- 6 · best druggability 0.47
Structure
1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuole membrane protein 1 | protein | 406 | 74% helix, 0% strand | Q6NYY9 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.47 | 0.75 | 22 | empty |
| 2 | 171 | 0.46 | 0.75 | 25 | empty |
| 3 | 194 | 0.45 | 0.74 | 26 | empty |
| 4 | 195 | 0.45 | 0.73 | 25 | empty |
| 5 | 127 | 0.45 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NYY9
- Elsewhere: UniProt Q6NYY9 · AlphaFold DB Q6NYY9
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