Research workbench
AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor (P35953)
Analyse AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P35953
- Type
- protein
- Length
- 873 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB6F9E42B42dBC2b9Bd69c9f21BD545B46139e3d6
- Molecule
- Very low-density lipoprotein receptor
- UniProt
- P35953
- Pockets
- 9 · best druggability 0.80
Structure
1 distinct chain · 11% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Very low-density lipoprotein receptor | protein | 873 | 11% helix, 27% strand | P35953 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 966 | 0.80 | 0.82 | 95 | empty |
| 2 | 351 | 0.61 | 0.78 | 39 | empty |
| 3 | 234 | 0.57 | 0.79 | 35 | empty |
| 4 | 280 | 0.56 | 0.77 | 26 | empty |
| 5 | 204 | 0.45 | 0.73 | 23 | empty |
Modifications
Observed in the structure: 33 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35953
- Elsewhere: UniProt P35953 · AlphaFold DB P35953
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