Research workbench
AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor (P98156)
Analyse AlphaFold monomer V2.0 prediction for very low-density lipoprotein receptor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P98156
- Type
- protein
- Length
- 873 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x661f92Fc5950020C7aB410B5F5b9a3f429F49Ae5
- Molecule
- Very low-density lipoprotein receptor
- UniProt
- P98156
- Pockets
- 8 · best druggability 0.78
Structure
1 distinct chain · 10% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Very low-density lipoprotein receptor | protein | 873 | 10% helix, 27% strand | P98156 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 602 | 0.78 | 0.84 | 71 | empty |
| 2 | 504 | 0.62 | 0.75 | 52 | empty |
| 3 | 228 | 0.60 | 0.80 | 33 | empty |
| 4 | 256 | 0.53 | 0.76 | 24 | empty |
| 5 | 217 | 0.49 | 0.75 | 33 | empty |
Modifications
Observed in the structure: 33 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P98156
- Elsewhere: UniProt P98156 · AlphaFold DB P98156
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