Research workbench
AlphaFold monomer V2.0 prediction for validamine 7-phosphate valienyltransferase (Q15JG1)
Analyse AlphaFold monomer V2.0 prediction for validamine 7-phosphate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q15JG1
- Type
- protein
- Length
- 497 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x2723cf191c24FC5306B779dD828bBaB5059845A2
- Molecule
- Validamine 7-phosphate valienyltransferase
- UniProt
- Q15JG1
- Pockets
- 4 · best druggability 0.83
Structure
1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Validamine 7-phosphate valienyltransferase | protein | 497 | 47% helix, 19% strand | Q15JG1 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 673 | 0.83 | 0.88 | 73 | empty |
| 2 | 228 | 0.52 | 0.76 | 33 | empty |
| 3 | 67 | 0.32 | 0.75 | 15 | empty |
| 4 | 71 | 0.31 | 0.74 | 15 | empty |
Compared structures
- 3T5T · Vall from streptomyces hygroscopicus in apo form · an experimental structure of the same protein · chain A against B, TM-score 0.92
- 3T5T · Vall from streptomyces hygroscopicus in apo form · an experimental structure of the same protein · chain A against B, TM-score 0.92
- 4F9F · Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP and… · an experimental structure of the same protein · chain A against E, TM-score 0.92
- 4F9F · Crystal structure of vlde, the pseudo-glycosyltransferase, in complex with GDP and… · an experimental structure of the same protein · chain A against E, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15JG1
- Elsewhere: UniProt Q15JG1 · AlphaFold DB Q15JG1
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