Research workbench
AlphaFold monomer V2.0 prediction for vitellogenin-5 (P06125)
Analyse AlphaFold monomer V2.0 prediction for vitellogenin-5 (P06125) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P06125
- Type
- protein
- Length
- 1,603 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x600273d85C67fEE1d3DBd0E276a2E4D3b550319e
- Molecule
- Vitellogenin-5
- UniProt
- P06125
- Pockets
- 20 · best druggability 0.84
Structure
1 distinct chain · 30% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vitellogenin-5 | protein | 1603 | 30% helix, 36% strand | P06125 |
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 981 | 0.84 | 0.85 | 76 | empty |
| 2 | 984 | 0.81 | 0.82 | 93 | empty |
| 3 | 840 | 0.77 | 0.80 | 79 | empty |
| 4 | 72 | 0.76 | 0.98 | 18 | empty |
| 5 | 71 | 0.73 | 0.98 | 23 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06125
- Elsewhere: UniProt P06125 · AlphaFold DB P06125
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