Research workbench
AlphaFold monomer V2.0 prediction for cysteine protease-like vira (Q7BU69)
Analyse AlphaFold monomer V2.0 prediction for cysteine protease-like vira (Q7BU69) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7BU69
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- Cysteine protease-like vira
- UniProt
- Q7BU69
- Pockets
- 3 · best druggability 0.54
Structure
1 distinct chain · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine protease-like vira | protein | 400 | 33% helix, 24% strand | Q7BU69 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 253 | 0.54 | 0.76 | 32 | empty |
| 2 | 208 | 0.53 | 0.78 | 31 | empty |
| 3 | 157 | 0.42 | 0.74 | 19 | empty |
Compared structures
- 4FMB · Vira-RAB1 complex structure · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 4FMB · VirA-Rab1 complex structure · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 3EE1 · Novel fold of vira, a type III secretion system effector protein from shigella flexneri · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 3EE1 · Novel fold of VirA, a type III secretion system effector protein from Shigella flexneri · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 3EB8 · VIRA · an experimental structure of the same protein · chain A against B, TM-score 0.83
- 3EB8 · VirA · an experimental structure of the same protein · chain A against B, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7BU69
- Elsewhere: UniProt Q7BU69 · AlphaFold DB Q7BU69
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