Research workbench
AlphaFold monomer V2.0 prediction for vacuolar calcium ion transporter (J9VDQ4)
Analyse AlphaFold monomer V2.0 prediction for vacuolar calcium ion transporter (J9VDQ4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- J9VDQ4
- Type
- protein
- Length
- 606 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x99b776DEB2a7E235736ca77F71997f7A305AC803
- Molecule
- Vacuolar calcium ion transporter
- UniProt
- J9VDQ4
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 58% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar calcium ion transporter | protein | 606 | 58% helix, 2% strand | J9VDQ4 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 775 | 0.75 | 0.80 | 73 | empty |
| 2 | 67 | 0.37 | 0.77 | 17 | empty |
| 3 | 59 | 0.30 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9VDQ4
- Elsewhere: UniProt J9VDQ4 · AlphaFold DB J9VDQ4
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