Research workbench
AlphaFold monomer V2.0 prediction for uvrabc system protein B (P37954)
Analyse AlphaFold monomer V2.0 prediction for uvrabc system protein B (P37954) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P37954
- Type
- protein
- Length
- 661 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x2A8f96ac46C10A0B6ae8F3aAd2b72031d1746055
- Molecule
- Uvrabc system protein B
- UniProt
- P37954
- Pockets
- 6 · best druggability 0.77
Structure
1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uvrabc system protein B | protein | 661 | 44% helix, 18% strand | P37954 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1170 | 0.77 | 0.79 | 86 | empty |
| 2 | 457 | 0.69 | 0.80 | 49 | empty |
| 3 | 80 | 0.47 | 0.82 | 23 | empty |
| 4 | 178 | 0.44 | 0.74 | 20 | empty |
| 5 | 92 | 0.35 | 0.75 | 21 | empty |
Compared structures
- 2D7D · Structural insights into the cryptic DNA dependent ATP-ase activity of uvrb · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 2D7D · Structural insights into the cryptic DNA dependent ATP-ase activity of UvrB · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 2NMV · Damage detection by the UvrABC pathway: Crystal structure of UvrB bound to… · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 2NMV · Damage detection by the uvrabc pathway: crystal structure of uvrb bound to… · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 3V4R · Crystal structure of a uvrb dimer-DNA complex · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 3V4R · Crystal structure of a UvrB dimer-DNA complex · an experimental structure of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37954
- Elsewhere: UniProt P37954 · AlphaFold DB P37954
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