Research workbench
AlphaFold monomer V2.0 prediction for U3 small nucleolar RNA- associated protein 25 (P40498)
Analyse AlphaFold monomer V2.0 prediction for U3 small nucleolar RNA- associated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40498
- Type
- protein
- Length
- 721 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- U3 small nucleolar RNA-associated protein 25
- UniProt
- P40498
- Pockets
- 15 · best druggability 0.67
Structure
1 distinct chain · 37% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U3 small nucleolar RNA-associated protein 25 | protein | 721 | 37% helix, 14% strand | P40498 |
Pockets
15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.67 | 0.86 | 21 | empty |
| 2 | 352 | 0.61 | 0.78 | 34 | empty |
| 3 | 324 | 0.60 | 0.78 | 31 | empty |
| 4 | 273 | 0.56 | 0.77 | 36 | empty |
| 5 | 213 | 0.51 | 0.77 | 31 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40498
- Elsewhere: UniProt P40498 · AlphaFold DB P40498
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