Research workbench
AlphaFold monomer V2.0 prediction for U3 small nucleolar RNA- associated protein 25 (B8LVD6)
Analyse AlphaFold monomer V2.0 prediction for U3 small nucleolar RNA- associated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B8LVD6
- Type
- protein
- Length
- 729 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd7BceDA0b55dbEde1C94d30aA0d6409be898E5bF
- Molecule
- U3 small nucleolar RNA-associated protein 25
- UniProt
- B8LVD6
- Pockets
- 10 · best druggability 0.69
Structure
1 distinct chain · 38% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U3 small nucleolar RNA-associated protein 25 | protein | 729 | 38% helix, 13% strand | B8LVD6 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.69 | 0.82 | 38 | empty |
| 2 | 663 | 0.68 | 0.76 | 59 | empty |
| 3 | 259 | 0.58 | 0.78 | 37 | empty |
| 4 | 285 | 0.57 | 0.77 | 26 | empty |
| 5 | 148 | 0.54 | 0.81 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8LVD6
- Elsewhere: UniProt B8LVD6 · AlphaFold DB B8LVD6
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