Research workbench
AlphaFold monomer V2.0 prediction for sn-glycerol-3-phosphate-binding periplasmic protein ugpb (Q83PU5)
Analyse AlphaFold monomer V2.0 prediction for sn-glycerol-3-phosphate-binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q83PU5
- Type
- protein
- Length
- 438 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbDA05C32aD6eE153C8C5A78dfa48d7Ba25694fea
- Molecule
- Sn-glycerol-3-phosphate-binding periplasmic protein ugpb
- UniProt
- Q83PU5
- Pockets
- 5 · best druggability 0.66
Structure
1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sn-glycerol-3-phosphate-binding periplasmic protein ugpb | protein | 438 | 48% helix, 15% strand | Q83PU5 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.66 | 0.86 | 28 | empty |
| 2 | 52 | 0.42 | 0.82 | 12 | empty |
| 3 | 115 | 0.42 | 0.76 | 26 | empty |
| 4 | 93 | 0.36 | 0.75 | 22 | empty |
| 5 | 84 | 0.34 | 0.74 | 22 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83PU5
- Elsewhere: UniProt Q83PU5 · AlphaFold DB Q83PU5
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