Research workbench
AlphaFold monomer V2.0 prediction for sn-glycerol-3-phosphate-binding periplasmic protein ugpb (Q7CPK0)
Analyse AlphaFold monomer V2.0 prediction for sn-glycerol-3-phosphate-binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7CPK0
- Type
- protein
- Length
- 438 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x58E94122e9f3743Bc7F50265785435fF541178A2
- Molecule
- Sn-glycerol-3-phosphate-binding periplasmic protein ugpb
- UniProt
- Q7CPK0
- Pockets
- 4 · best druggability 0.66
Structure
1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sn-glycerol-3-phosphate-binding periplasmic protein ugpb | protein | 438 | 48% helix, 15% strand | Q7CPK0 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.66 | 0.86 | 29 | empty |
| 2 | 110 | 0.40 | 0.76 | 23 | empty |
| 3 | 135 | 0.40 | 0.74 | 22 | empty |
| 4 | 62 | 0.31 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CPK0
- Elsewhere: UniProt Q7CPK0 · AlphaFold DB Q7CPK0
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