Research workbench
AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis protein tsab (P76256)
Analyse AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P76256
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF8cD1d8d93E9783063700De244A6e3cf6A195579
- Molecule
- TRNA threonylcarbamoyladenosine biosynthesis protein tsab
- UniProt
- P76256
- Pockets
- 3 · best druggability 0.43
Structure
1 distinct chain · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA threonylcarbamoyladenosine biosynthesis protein tsab | protein | 231 | 35% helix, 26% strand | P76256 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.43 | 0.83 | 15 | empty |
| 2 | 109 | 0.39 | 0.75 | 25 | empty |
| 3 | 65 | 0.37 | 0.78 | 13 | empty |
Compared structures
- 4WQ5 · YGJD(V85E)-yeaz heterodimer in complex with ATP · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 6Z81 · Tsabd bound to the inhibitor · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 6Z81 · TsaBD bound to the inhibitor · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 4YDU · Crystal structure of E. coli YgjD-YeaZ heterodimer in complex with ADP · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 4YDU · Crystal structure of E. COLI ygjd-yeaz heterodimer in complex with ADP · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 4WQ4 · E. coli YgjD(E12A)-YeaZ heterodimer in complex with ATP · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 4WQ4 · E. COLI YGJD(E12A)-yeaz heterodimer in complex with ATP · an experimental structure of the same protein · chain A against C, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76256
- Elsewhere: UniProt P76256 · AlphaFold DB P76256
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