Research workbench
AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase D (Q3A6I8)
Analyse AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase D (Q3A6I8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3A6I8
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3b84a90162fe4f819Fd4D4c3A59BE544DcCa02aa
- Molecule
- TRNA pseudouridine synthase D
- UniProt
- Q3A6I8
- Pockets
- 4 · best druggability 0.62
Structure
1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase D | protein | 398 | 39% helix, 22% strand | Q3A6I8 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 336 | 0.62 | 0.78 | 37 | empty |
| 2 | 234 | 0.54 | 0.77 | 21 | empty |
| 3 | 87 | 0.36 | 0.75 | 16 | empty |
| 4 | 75 | 0.35 | 0.76 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3A6I8
- Elsewhere: UniProt Q3A6I8 · AlphaFold DB Q3A6I8
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