Research workbench
AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase D (C0PXA5)
Analyse AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase D (C0PXA5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- C0PXA5
- Type
- protein
- Length
- 349 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbb2F1C7CB3A1eeFAc24fCa72cc627162D5413FD7
- Molecule
- TRNA pseudouridine synthase D
- UniProt
- C0PXA5
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase D | protein | 349 | 34% helix, 26% strand | C0PXA5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 620 | 0.68 | 0.77 | 61 | empty |
| 2 | 99 | 0.55 | 0.84 | 20 | empty |
| 3 | 123 | 0.44 | 0.77 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C0PXA5
- Elsewhere: UniProt C0PXA5 · AlphaFold DB C0PXA5
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