Research workbench
AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase B (Q87M04)
Analyse AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase B (Q87M04) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q87M04
- Type
- protein
- Length
- 314 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x37B5dD4976fE9694fba3e257B1cFFdc5F5Ce91b6
- Molecule
- TRNA pseudouridine synthase B
- UniProt
- Q87M04
- Pockets
- 3 · best druggability 0.63
Structure
1 distinct chain · 27% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase B | protein | 314 | 27% helix, 34% strand | Q87M04 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.63 | 0.80 | 40 | empty |
| 2 | 56 | 0.25 | 0.73 | 20 | empty |
| 3 | 51 | 0.23 | 0.72 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87M04
- Elsewhere: UniProt Q87M04 · AlphaFold DB Q87M04
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