Research workbench
AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase B (A4VPN8)
Analyse AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase B (A4VPN8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A4VPN8
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x46EfCa788d03A3e879DAcDb96552AB8Bbc7e20b3
- Molecule
- TRNA pseudouridine synthase B
- UniProt
- A4VPN8
- Pockets
- 3 · best druggability 0.65
Structure
1 distinct chain · 27% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase B | protein | 305 | 27% helix, 35% strand | A4VPN8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.65 | 0.80 | 40 | empty |
| 2 | 91 | 0.33 | 0.74 | 25 | empty |
| 3 | 85 | 0.32 | 0.73 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4VPN8
- Elsewhere: UniProt A4VPN8 · AlphaFold DB A4VPN8
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