Research workbench
AlphaFold monomer V2.0 prediction for trafficking protein particle complex subunit 31 (Q03337)
Analyse AlphaFold monomer V2.0 prediction for trafficking protein particle complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q03337
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbDA05C32aD6eE153C8C5A78dfa48d7Ba25694fea
- Molecule
- Trafficking protein particle complex subunit 31
- UniProt
- Q03337
- Pockets
- 3 · best druggability 0.52
Structure
1 distinct chain · 36% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trafficking protein particle complex subunit 31 | protein | 283 | 36% helix, 9% strand | Q03337 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 237 | 0.52 | 0.76 | 31 | empty |
| 2 | 51 | 0.32 | 0.77 | 13 | empty |
| 3 | 56 | 0.27 | 0.73 | 15 | empty |
Compared structures
- 7KMT · Structure of the yeast trappiii-YPT1(RAB1) complex · an experimental structure of the same protein · chain A against J, TM-score 0.62
- 7KMT · Structure of the yeast TRAPPIII-Ypt1(Rab1) complex · an experimental structure of the same protein · chain A against J, TM-score 0.62
- 7U06 · Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite… · an experimental structure of the same protein · chain A against J, TM-score 0.61
- 7U05 · Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite… · an experimental structure of the same protein · chain A against j, TM-score 0.61
- 7E2D · Monomer of TRAPPII (Closed) · an experimental structure of the same protein · chain A against G, TM-score 0.61
- 7E2D · Monomer of trappii (closed) · an experimental structure of the same protein · chain A against G, TM-score 0.61
- 7E94 · Intact TRAPPII (State II) · an experimental structure of the same protein · chain A against G, TM-score 0.61
- 7E94 · Intact trappii (state II) · an experimental structure of the same protein · chain A against G, TM-score 0.61
- 7E8S · Intact trappii (state I). · an experimental structure of the same protein · chain A against G, TM-score 0.61
- 7E8S · Intact TRAPPII (state I). · an experimental structure of the same protein · chain A against G, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03337
- Elsewhere: UniProt Q03337 · AlphaFold DB Q03337
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