Research workbench
AlphaFold monomer V2.0 prediction for E3 ubiquitin ligase TRIM40 (Q6P9F5)
Analyse AlphaFold monomer V2.0 prediction for E3 ubiquitin ligase TRIM40 (Q6P9F5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6P9F5
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xE98bd0722a8eEb0377b675F85e9ceBC2DbC988D6
- Molecule
- E3 ubiquitin ligase TRIM40
- UniProt
- Q6P9F5
- Pockets
- 3 · best druggability 0.57
Structure
1 distinct chain · 57% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin ligase TRIM40 | protein | 258 | 57% helix, 9% strand | Q6P9F5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.57 | 0.79 | 26 | empty |
| 2 | 117 | 0.39 | 0.75 | 18 | empty |
| 3 | 54 | 0.31 | 0.76 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P9F5
- Elsewhere: UniProt Q6P9F5 · AlphaFold DB Q6P9F5
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