Research workbench
AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM39 (Q6MFZ5)
Analyse AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM39… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6MFZ5
- Type
- protein
- Length
- 488 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xfA9E55a3C2F78504f3a636E1aE6CC93EFb2e497A
- Molecule
- E3 ubiquitin-protein ligase TRIM39
- UniProt
- Q6MFZ5
- Pockets
- 4 · best druggability 0.60
Structure
1 distinct chain · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase TRIM39 | protein | 488 | 42% helix, 20% strand | Q6MFZ5 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.60 | 0.75 | 34 | empty |
| 2 | 60 | 0.53 | 0.87 | 21 | empty |
| 3 | 59 | 0.32 | 0.76 | 13 | empty |
| 4 | 58 | 0.29 | 0.74 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6MFZ5
- Elsewhere: UniProt Q6MFZ5 · AlphaFold DB Q6MFZ5
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