Research workbench
AlphaFold monomer V2.0 prediction for serotransferrin (P02787)
Analyse AlphaFold monomer V2.0 prediction for serotransferrin (P02787) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P02787
- Type
- protein
- Length
- 698 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- Serotransferrin
- UniProt
- P02787
- Pockets
- 8 · best druggability 0.73
Structure
1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serotransferrin | protein | 698 | 35% helix, 19% strand | P02787 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.73 | 0.91 | 33 | empty |
| 2 | 419 | 0.67 | 0.79 | 53 | empty |
| 3 | 255 | 0.66 | 0.83 | 40 | empty |
| 4 | 124 | 0.64 | 0.88 | 30 | empty |
| 5 | 145 | 0.46 | 0.76 | 25 | empty |
Modifications
Observed in the structure: 19 disulfide (disulfide).
Compared structures
- 3V83 · The 2.1 ångström crystal structure of diferric human transferrin · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3V83 · The 2.1 angstrom crystal structure of diferric human transferrin · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 6D04 · Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 6D04 · Cryo-EM structure of a plasmodium vivax invasion complex essential for entry into human… · an experimental structure of the same protein · chain A against C, TM-score 0.95
- 6D05 · Cryo-EM structure of a plasmodium vivax invasion complex essential for entry into human… · an experimental structure of the same protein · chain A against C, TM-score 0.95
- 6D05 · Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human… · an experimental structure of the same protein · chain A against C, TM-score 0.95
- 6D03 · Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human… · an experimental structure of the same protein · chain A against C, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02787
- Elsewhere: UniProt P02787 · AlphaFold DB P02787
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