Research workbench
AlphaFold monomer V2.0 prediction for periplasmic trehalase (P13482)
Analyse AlphaFold monomer V2.0 prediction for periplasmic trehalase (P13482) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P13482
- Type
- protein
- Length
- 565 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb3c9140a3Ab4F8AA2F14f418833981d248115b94
- Molecule
- Periplasmic trehalase
- UniProt
- P13482
- Pockets
- 4 · best druggability 0.75
Structure
1 distinct chain · 46% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic trehalase | protein | 565 | 46% helix, 9% strand | P13482 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.75 | 0.98 | 24 | empty |
| 2 | 387 | 0.58 | 0.75 | 53 | empty |
| 3 | 79 | 0.36 | 0.76 | 14 | empty |
| 4 | 59 | 0.28 | 0.73 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2JG0 · Family 37 trehalase from Escherichia coli in complex with 1- thiatrehazolin · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 2JG0 · Family 37 trehalase from escherichia COLI in complex with 1- thiatrehazolin · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 2WYN · Structure of family 37 trehalase from escherichia COLI in complex with a… · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 2WYN · Structure of family 37 trehalase from Escherichia coli in complex with a… · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 2JJB · Family 37 trehalase from Escherichia coli in complex with casuarine-6… · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 2JJB · Family 37 trehalase from escherichia COLI in complex with casuarine-6… · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 2JF4 · Family 37 trehalase from escherichia COLI in complex with validoxylamine · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 2JF4 · Family 37 trehalase from Escherichia coli in complex with validoxylamine · an experimental structure of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13482
- Elsewhere: UniProt P13482 · AlphaFold DB P13482
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.