Research workbench
AlphaFold monomer V2.0 prediction for copalyl diphosphate synthase 2 (J9R388)
Analyse AlphaFold monomer V2.0 prediction for copalyl diphosphate synthase 2 (J9R388) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- J9R388
- Type
- protein
- Length
- 740 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xeeDd265089EB92c06A848163Be0A31aA6d202E0e
- Molecule
- Copalyl diphosphate synthase 2
- UniProt
- J9R388
- Pockets
- 8 · best druggability 0.78
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copalyl diphosphate synthase 2 | protein | 740 | 66% helix, 2% strand | J9R388 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 735 | 0.78 | 0.82 | 56 | empty |
| 2 | 729 | 0.78 | 0.82 | 82 | empty |
| 3 | 406 | 0.71 | 0.82 | 37 | empty |
| 4 | 200 | 0.55 | 0.79 | 20 | empty |
| 5 | 135 | 0.44 | 0.76 | 23 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9R388
- Elsewhere: UniProt J9R388 · AlphaFold DB J9R388
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